Scaffold Ga0170791_14290789

Overview

Basic Information

• Taxon OID: 3300013295
• Scaffold ID: Ga0170791_14290789
• Source Dataset Name: northern Canada Lakes metatranscriptome co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4395
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium casensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035216	Metagenome	172	Y
F050981	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0170791_142907891	F050981	N/A	QVAGVSAMRWLAIICLSASSVCAQITDDELSKISKEEIVLTVKHLQALTAEAKAAADRAIASEARMQAKLVDATNALMDSQNQLLKVDQDIRNLQAQTEEQTRIAVGAKADAVKAQRLADHRGNLLGWLGAGLLCIVCLRLTSILPPPYGFLLPVAAIPAGYWLARLLL*
Ga0170791_142907897	F035216	N/A	MIITYIIVSSIICTGAFAIGRAQPRENRRLGKMVCQAHIPHRLETPVSETAKVRMELELALLQLESERLESERLRSIIRSTMR*