Scaffold Ga0170791_12232767

Overview

Basic Information

• Taxon OID: 3300013295
• Scaffold ID: Ga0170791_12232767
• Source Dataset Name: northern Canada Lakes metatranscriptome co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3251
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054583	Metagenome	139	Y
F097207	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170791_122327673	F054583	AGGAG	MRGQGRLSVVAENLFATSAKRHNEPVMNSKWKMCWKCQKDKDPRGGFLRITAGLHKFICKDCIDAKEKERSLKREE*
Ga0170791_122327675	F097207	GGAGG	MPDMQTALSNALKTTINDGEKEDMQTTQTNTQGKKIFGVTNNVTRATFEYVQHHPNETSAEICASMERLGYKSSSVGSLLAQFAKQGLAERDDRGRYITIVPEYRPLKTKKKTLTLVSKPEEIKPKRKYEKRAATGIGALLREKLENTPMPSQEALDAAAYAMGGSVNKRFTSLVRIKTPEEILKDMTVYQARELYDHLKQMFGG*