Scaffold Ga0120688_1030664

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120688_1030664

Scaffold Ga0120688_1030664

Overview

Basic Information
Taxon OID	3300013293 Open in IMG/M
Scaffold ID	Ga0120688_1030664 Open in IMG/M
Source Dataset Name	Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-13
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Weill Cornell Medical College
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	514
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Canal → Unclassified → Unclassified → Aquatic Canal → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Source Dataset Sampling Location
Location Name	USA:New York City
Coordinates	Lat. (^o)	40.67	Long. (^o)	-73.99	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048675	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120688_10306641	F048675	N/A	MEEHMDSNEVLFCEHYAAAQSLKSFWTQLASTYGCMMIVLTPNMLIIKPHWFAKWLLSLLRLDLCHEIPITRIRGVIEKGKWSSYGKVELHFQTVEGKDQNILLYLKKYHDFVDKIKGSIHR*

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