Scaffold Ga0136641_1003966

Overview

Basic Information

• Taxon OID: 3300013286
• Scaffold ID: Ga0136641_1003966
• Source Dataset Name: Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5629
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Elizabeth Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.3697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072014	Metagenome	121	Y
F078637	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136641_10039665	F072014	GGCGG	MSGDSWVFKGSPRDVVAALMQRAWDDGVTDDDRILLETAAGELADSLDRNVRLAIVIEKSGVGL*
Ga0136641_10039669	F078637	N/A	VTMPAEWITVEFLGGPLDGALRPVQVGVAVFYLANGAVIHAYVVDEIFNGYAMRQVMRHQEIIHSSRFA*