Basic Information | |
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Taxon OID | 3300013286 Open in IMG/M |
Scaffold ID | Ga0136641_1002689 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7070 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (90.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Elizabeth Lake, Yosemite National Park, California, USA | |||||||
Coordinates | Lat. (o) | 37.8453 | Long. (o) | -119.3697 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000652 | Metagenome / Metatranscriptome | 959 | Y |
F014848 | Metagenome / Metatranscriptome | 259 | Y |
F041568 | Metagenome / Metatranscriptome | 159 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136641_100268915 | F041568 | AGGAG | MFTTDNQVALKEELNLMFSEQGAAFTAGYTNQMAQEMLRLLPKRKQKEFVNTVAAFNGRQLVTVKNCLTRQEVDIRREDLGTVCDPSTERFHSM* |
Ga0136641_100268917 | F014848 | AGGAG | MQHYDLIERTERDGYTIIVDKTYEDINPRDHFEDDNIDEILRKINNGTYEWFMLRVRVLVEGLELGSAYLGGCLYEDPREVLSDGTAEDFIAEAMTEAKSQVYRLSKKFAELSEQVDRESACA* |
Ga0136641_10026899 | F000652 | AGGA | MKVTVRTELVQVLEVPGTWDREDIFNFLAECQSFREAFEGVSNEEQTARIVDVRVFEETVTEMGEE* |
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