NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136641_1002042

Scaffold Ga0136641_1002042


Overview

Basic Information
Taxon OID3300013286 Open in IMG/M
Scaffold IDGa0136641_1002042 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8225
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Elizabeth Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.3697Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008554Metagenome331Y
F011276Metagenome292Y
F013757Metagenome / Metatranscriptome268Y
F017266Metagenome241Y
F044486Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0136641_10020421F008554N/AMTLEDEMLERSGKEMAREIDREILWGMLEGLGWTRVMLPRFVDNHHAIDIGYWLADNCKRAFERSGRDFLFESSKDANWFQLRWMS*
Ga0136641_100204219F013757AGGAMLTQCIAKAKLVYNKRLQAYKLVVAFNAHKQFKKDKYGNEKVVYAFPVQAKCAYVSGDISAKTLQADLAQMLPTVYATLRTNSVEFVE*
Ga0136641_100204222F044486GGCGGVVLGALCTSLRIDPLNIYFLNAGALLYLIWAVRIRELNLVLVNAVLLAIYVVGLFYTAG*
Ga0136641_10020424F017266N/AMAQGRQAGKSALINFWNAMRNTHSPKIKWQRLPGLKLQAYTDDVAPRGFERGLNESDMDPVQAWSINCRCGERMSFNVWQFKSEKHITMFLMKWAS*
Ga0136641_10020429F011276AGGAGMIKGLMGTKGIMVSGGNTSMPYVNTVSGSMGNPMQGMLRIHGSDMQVFDGGSWLNISTSYATVELDQETQDLLTWARTQRQLEMNRATLIENNPALEKAYQAVLKAEANFEVLAKFVEHDHV*
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