Scaffold Ga0136641_1000985

Overview

Basic Information

• Taxon OID: 3300013286
• Scaffold ID: Ga0136641_1000985
• Source Dataset Name: Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11953
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Elizabeth Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.3697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F015431	Metagenome	254	Y
F075840	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136641_100098516	F001937	AGG	MSPDVATIVYSYFFVGVALLAGVSMAARHAIVKHTEELKDKLNRIEYALYNDGKTGLINKVEELLENQQCIKIDVEILKTKAE*
Ga0136641_100098518	F075840	N/A	MWSKWFVSNAITAVVIIGKSPLDFNSTDWKHALNTVWLSVVPVLVAWANPKHDLTMTVTK
Ga0136641_10009855	F015431	AGAAGG	MAVGRKQVRSTLATFIAPPAIDGINQVFTSFPKRIDFQVNSLPSQVNRCVAVIFIESETESRIAVGGAHSGWKRIDYRVVIQLFHHSLERLAEDAMNNLDGIIDDLKAKLRSDHRFGDDSGTLVWQGAEPVIDVSYGEPLSQKGNSIETWSSMAFTVTQMIQA*