Basic Information | |
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Taxon OID | 3300013286 Open in IMG/M |
Scaffold ID | Ga0136641_1000299 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21187 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (56.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Elizabeth Lake, Yosemite National Park, California, USA | |||||||
Coordinates | Lat. (o) | 37.8453 | Long. (o) | -119.3697 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028070 | Metagenome / Metatranscriptome | 192 | Y |
F041564 | Metagenome / Metatranscriptome | 159 | Y |
F042147 | Metagenome / Metatranscriptome | 158 | Y |
F064358 | Metagenome / Metatranscriptome | 128 | Y |
F071905 | Metagenome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136641_100029912 | F042147 | N/A | MIANGTIKTIDDEDDIYISLTALCSYFAQSAINMKQEVDEAEPRDKRYAKGLLDMMHTIADEMIELGKFEAQRRMINSPEDLLKMIDRNPFGKIE* |
Ga0136641_100029929 | F041564 | N/A | MEYDYSNEEHRELMEYLLEEGAAILDGLDEDGQPVYKFDMEILEEVMPELHQVLTDDMDAILLDLFQKDLIEISYDEDLNASMKMSLEAIDALEQAGFDLSGEDENKDF* |
Ga0136641_100029936 | F028070 | AGAAG | MEKIKYTTEMAKKIRGVKVPVKNLVLDVRARPNYLALTVYESNIMEMNESQRMAVMDYLVLVRELIMSYGTPCEIEGMKHTHEQAREQRRRND* |
Ga0136641_100029938 | F064358 | AGGA | MLCFSCSKQKNELLPKKSAIMDGVLLYMCQSCIDEKFEPRWVIILAGRQNGAESVRDYIIKHRYIGKTIFAEELIA* |
Ga0136641_10002995 | F071905 | AGGAGG | MAKSTKLWDNKDWVVKRYKVERKSILQMAMEAKCSHMTIQRALERFELIKKPRKWTK* |
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