Scaffold Ga0136641_1000253

Overview

Basic Information

• Taxon OID: 3300013286
• Scaffold ID: Ga0136641_1000253
• Source Dataset Name: Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22563
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (77.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Elizabeth Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.3697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056554	Metagenome / Metatranscriptome	137	Y
F070923	Metagenome	122	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136641_100025310	F090310	GAG	MSSNLRTIADSLAAGLQSVSWGIASTIVQRKNWASVDVDAMSVPHVFVVPGSADVTRISRLMMQVDYTVTVFVGRHVTTDSDVDAMLDLADSVMLQVRAHSFGLNITWPTGVTSPQTVTIDLNPDDALTERNVWRAVITATYRVFESNVLPTV*
Ga0136641_100025313	F056554	AGG	MAIALGKDASSSPPFGSGIISATFTEECETIDISNRSNVGGSAGAPGRKVAKAGFVTKTWEIECHDPSSLISSLEAAGSGFTVMSVTENISVDGAVTFNVTAKEF*
Ga0136641_100025314	F098561	AGGA	MAITLGKDCSISLDGGYIASARNVTLTESARTIEVNAYGSRYSAAYSTGYECTVSVELNDPAELVSAFSRMHTGTPFTVYGGVSGFSFLAVLTGISETDPIDGVVTCTLEAKMTDPRLTRE*
Ga0136641_100025329	F070923	GGCGG	VTVGDAPGGMLPHMRSRLRQEIGPRAVHAGRAFDEFVDAICRCWNAEHWTKLARTQPESEMLAVMDAKVLIAKVGEDVEAMWGASPELRTLYADVGHQAVEVFARIWFESMSNRTWMRQACREARKT*
Ga0136641_100025330	F102439	N/A	MGEVQRSLIADEDLPPAKGKRRRMPARLTPAMRKFLTRLARIGARVTWTIELLYDPSKGGQGELTDRAKAGDHTLVLDTVREVEYRASMLADDIEVFMTPPDRLPSEPGHPSRVDAMARRQAAKQHIFDCDKS*