Scaffold Ga0136641_1000095

Overview

Basic Information

• Taxon OID: 3300013286
• Scaffold ID: Ga0136641_1000095
• Source Dataset Name: Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35819
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (76.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Elizabeth Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.3697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F039985	Metagenome / Metatranscriptome	162	N
F044360	Metagenome	154	Y
F057986	Metagenome	135	Y
F066574	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136641_100009532	F044360	AGGA	MALKKLLETDVYPSDSFQVWNQALVVDIELAKLEHEKVYGIGRVLELVDAEFRRKFAAQRERIAEAVQARDEERLEKASKGLVAAYKALTRWAEGVGLERMPKIDCMEHRMQDGSLMVVVRQDKDRIWYEQFQKEPGPRSIWTLEELETVMNAPTLKQVREIKAALPGTKMVPVQATGSSGFENMENDIDISKPYRGTKLFDTDKAEIHAQGGKR*
Ga0136641_100009534	F039985	AGGA	MLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYSEAAKAVDDNYGKLPIIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGADEFEPEPTPAPVRKASKPAPAPVMDDEEFF*
Ga0136641_100009541	F027776	GGTGG	MNPLEIEINRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGAESVEKRLVAELEILRGELKSLQTELLWEQTK*
Ga0136641_100009542	F057986	GGAG	MIETIKQLLATPTPLEMAARELVEAQRSKLEAESAREYAYHMVRYNDDRINRLRERLDELKGEQT*
Ga0136641_100009552	F066574	N/A	VRWLIPLFILSLVYGATVKRECSVSEFVNIAYSSHDPKERTNKILDWLDESGPVCTKEQLTLIYANLATIMGSADSVKIRSKIEQLYERAK*