NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136641_1000095

Scaffold Ga0136641_1000095


Overview

Basic Information
Taxon OID3300013286 Open in IMG/M
Scaffold IDGa0136641_1000095 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35819
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (76.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Elizabeth Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.3697Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027776Metagenome193Y
F039985Metagenome / Metatranscriptome162N
F044360Metagenome154Y
F057986Metagenome135Y
F066574Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0136641_100009532F044360AGGAMALKKLLETDVYPSDSFQVWNQALVVDIELAKLEHEKVYGIGRVLELVDAEFRRKFAAQRERIAEAVQARDEERLEKASKGLVAAYKALTRWAEGVGLERMPKIDCMEHRMQDGSLMVVVRQDKDRIWYEQFQKEPGPRSIWTLEELETVMNAPTLKQVREIKAALPGTKMVPVQATGSSGFENMENDIDISKPYRGTKLFDTDKAEIHAQGGKR*
Ga0136641_100009534F039985AGGAMLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYSEAAKAVDDNYGKLPIIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGADEFEPEPTPAPVRKASKPAPAPVMDDEEFF*
Ga0136641_100009541F027776GGTGGMNPLEIEINRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGAESVEKRLVAELEILRGELKSLQTELLWEQTK*
Ga0136641_100009542F057986GGAGMIETIKQLLATPTPLEMAARELVEAQRSKLEAESAREYAYHMVRYNDDRINRLRERLDELKGEQT*
Ga0136641_100009552F066574N/AVRWLIPLFILSLVYGATVKRECSVSEFVNIAYSSHDPKERTNKILDWLDESGPVCTKEQLTLIYANLATIMGSADSVKIRSKIEQLYERAK*

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