Scaffold Ga0136641_1000013

Overview

Basic Information

• Taxon OID: 3300013286
• Scaffold ID: Ga0136641_1000013
• Source Dataset Name: Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 76545
• Total Scaffold Genes: 129
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 99 (76.74%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Elizabeth Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.3697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F006979	Metagenome / Metatranscriptome	360	Y
F008806	Metagenome	327	Y
F009327	Metagenome / Metatranscriptome	319	Y
F009741	Metagenome / Metatranscriptome	313	Y
F010448	Metagenome / Metatranscriptome	303	Y
F014843	Metagenome / Metatranscriptome	259	Y
F014968	Metagenome	258	Y
F019092	Metagenome / Metatranscriptome	231	Y
F025484	Metagenome / Metatranscriptome	201	Y
F035737	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136641_1000013107	F008806	AGGGGG	MTFLLAEDEALRNLLKDMVVTDQKATGNGTPRKVGVWFGQPDQELTDQKYPYITIDMIDVGEDTSRAMRGRVKPMYLDNPAQMTQAIAYNPELHNWDISYPIPIRIDYQITTYSRQPRHDRELLAQLLYTKIPLRFAVLQPTDGTVRRLDVLDISKRDVTEQGKRLFVNAITVRISSEIAPATYNQLYKALNIRVTGTTGSQKLGRNQFNAIAPITIPKP*
Ga0136641_1000013117	F006979	AGAAG	MAKTIKVAGEKHTIKKNKSGDVIVDHAGNKGKYDKINLTKKAGSKTIAQGVKATKDWHKKNG*
Ga0136641_1000013120	F009327	GGA	MRGNKVQGRFKIDFESASMDEGIVDELRDPVGTTVSWWTWDPNVLASHYANWVDPIYDVSNQETGKGRRWNNPFDLPVIMAQQLRGTNVMNERGYYTTDTLRLVIAVDDLNRLLPEMIANPNLHIKDRVVFQGEVFVPARVLPRGRYKDRYSVVTIDCNQVNAEEMVNDPQFQSYSN*
Ga0136641_100001321	F014968	AGGAG	MSHIVQLSKEEVRACADIALNRWMMKFGSIDRPNYQDKSKLEPEIAANVRTIVAEYAVAKLYKKSMSFPFYPNEEHAFRTNLPDVFPNIEVKSIRTRDEIPVFPKDIHPGWVLVGARVTDRDYYSEVEVYGWLHMEDCQRDEWRYAPEGSWRIPLSEFNPSLTIM*
Ga0136641_100001351	F014843	GGA	MNVLVSLDGVLSSDTGEPIRAGVMLYYALNINNRVAIITSRNTEDAKHWLHSHGIINYDELIDTSYHLEGEDLKKRQFIISRSKAPVELYVDSDPSMCAWVFEEQGVPTIMFMNPGYLAVERRPDAPSKVRKWTDIENAIDRVNVAKSKDAASPKSLEFWQD*
Ga0136641_100001355	F019092	AGGAG	MSNVPLLGQKPADAEPMFRLLFCLVCQTLEELPPYDGDPELDMLLAVACETHAFPSGEPHKGKLFVLPLRSWADTKSKQEIIRQIKGGGSKGLAEIDDTFYESRSIFMEDAMACYKAHNKPKDGCVEWHDEKKMLIPKTEKERRAEGMEKYKDSPGQKTYLCDFCPVAIGVAQRKQKLIGMI*
Ga0136641_100001357	F005167	N/A	MAVNSSRSMNAGLNEGATDGKYRKVRPDTEVTADSANTLDNRQTLHPFYGYGFATSEYPNKVNPGK*
Ga0136641_100001359	F025484	GGAG	MADDGDGMLSMELQAKQIAQNITQYNGSAPCPTCGVIMNPVEFISNRGHCLSCLTQTKAARVKGRMA*
Ga0136641_100001360	F009741	GAGG	MTQHVDGRYDHTKPWSAFRSPINPDMVAKKYSYYGPWATNQERLTQQALMIMNVPGADIQAMVRPPLPQIQLFPARYGYGDRSQPGIDDIVTIDRNYTEPRVSWFSGGVSGYQAAERNALGSN*
Ga0136641_100001375	F035737	GGAGG	MPKNFIVNDQDWAHTLEKGVEDYTDMLMDAIYEGTDDEVSETLSGELFCGCSQCFWRETFFYLVPRLLEGYEEGKVELLEE*
Ga0136641_100001386	F010448	AGG	MKNGDISNVSSPQIVCVTDLVISLIKEETKTFLIKKVSSKIGNIDLQNANKLWVMSNKYEISLELAGFESEGWTEDLLDKAFEKLERRVVNPFNYWQLYEDSQELVAGLPYRPNLKAVLDIPARVAQYGSAGVQIDNI*