 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013285 Open in IMG/M |
| Scaffold ID | Ga0136642_1008929 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3187 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lower Cathedral Lake, Yosemite National Park, California, USA | |||||||
| Coordinates | Lat. (o) | 37.8453 | Long. (o) | -119.4233 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006264 | Metagenome / Metatranscriptome | 377 | Y |
| F010616 | Metagenome / Metatranscriptome | 301 | Y |
| F016785 | Metagenome / Metatranscriptome | 244 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0136642_10089291 | F016785 | AGGA | MLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIPVSNSTEPIRGIDYISPVVSPGIDYSTDVITKCLMPDGKVNFEFERISENDSIASQQAEKMVTYFINSKNDSYQIVRDWAQDSLLHKNGVVMISPIREPITQYKEVEGTRDNLRSFEIMAAEKGLVAKRQQMRRIDVDLQGVAQETMMPDETGQPTEPTPDEMQDAIKAHTIYRAKYKLTGFSTNIHIKHVAQHYFVCNPTIPGIQNQDFCGFYMPMTIHEAKSQYPYIDLEQFADHAAYGPAGAYQAGALENDLALHARD |
| Ga0136642_10089293 | F006264 | N/A | MTEDFSALFKQRLAGQAEVCARKSLEWLQKDLQGEYKLLPSEVYYLASAANILLNIRDTYGKK* |
| Ga0136642_10089294 | F010616 | N/A | AENPYVDKKDLIPVDELKVIPPRNKDLPDAGSQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELVMRKPDGTFTERGRGLYTYLIGEKGGGVWSLIDRDMVSVSAKNIADPWA* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |