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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013285 Open in IMG/M |
| Scaffold ID | Ga0136642_1007406 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3574 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lower Cathedral Lake, Yosemite National Park, California, USA | |||||||
| Coordinates | Lat. (o) | 37.8453 | Long. (o) | -119.4233 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008493 | Metagenome / Metatranscriptome | 332 | Y |
| F013757 | Metagenome / Metatranscriptome | 268 | Y |
| F014848 | Metagenome / Metatranscriptome | 259 | Y |
| F089889 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0136642_10074061 | F089889 | AGGAG | MYKTTATLCTAGDGYWSNKAKTVEITGLQLSYTNDELDFGELRVF |
| Ga0136642_10074062 | F013757 | AGGA | VLTNCVAKAKLVFNKKLQSYKLVVAFNAHKRIDDAGNIKYAFPTQAKCAYVSGDLLAENLQNELASVMPSVYATLRTNSVEFVE* |
| Ga0136642_10074064 | F014848 | AGAAGG | MTLYYDTIAEFERQGYDIIVDKTYEDTHPSHLFDDSCHDIKEICRKIDCGDYDWFMLRVRVLVEGLELAEEFLGGCLYTDAREVLSDGTAEDIIDQAMTHAKHKVYMLSRRFTELSYAVDAEGMMA* |
| Ga0136642_10074068 | F008493 | N/A | MMKTKRTARRDSNYVIYEAVSETGENYIGLTRKGTVSVAKAVKERWRKHVSRARNENRLWALYVYLKSGGLDMTWEHRVIAIVRGRAEAYHFERGLVKELQPTLNDQYM* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |