Scaffold Ga0136642_1005167

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1005167
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4487
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F026556	Metagenome / Metatranscriptome	197	Y
F033308	Metagenome	177	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_100516710	F026556	N/A	KLILGIALVVIAIALGPILGIWALNTLFPILHIPLTWETWAAFAILLGGASGIRYKK*
Ga0136642_10051674	F033308	N/A	MKTTDLNKFEIKREVGANWLPRGVVPFDLSAKNGIATFEVWAESIQDAEHQVSQFLEQDEHE*
Ga0136642_10051675	F002977	AGGA	MKTLELQIPAEGIMKTNDWGDSKVYRIACNCHDESHNHNVWVEADDHDVVVTVYTTGKTNWWSKTRWNHMWTLLTKGYVDTESTVHMTRQQAFNYAHTLLSAVEDVEQFRKKADDKRKTTD*
Ga0136642_10051678	F070810	GAG	MTVDKVWEIKLVWQNQDKYWWNEVCADVVEIFGLPGNRFTSHPYEDCMLFRFKSKKDYHLCKILLSDKIGT*