Scaffold Ga0136642_1004628

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1004628
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4817
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008860	Metagenome	326	N
F027395	Metagenome	194	N
F091222	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_10046282	F027395	AGGAG	MSYNVIAGSTIQFYTSVPFTSISGAVVNPDKVNFSYSIQGQTEQTFTWTNPTGDPTNTIKQGAGGVGYFYANISTVGQPGTWNWQWYGYPSSGTDTTATQVAAQGTVIVSASDL*
Ga0136642_10046286	F008860	N/A	MSTFVKSDTRTPVPGDIVFAHSNGLMGRAIRFGEFLRWRKGSHWNHACVISRVTQDGTAYVIQADLHGVNEATLDSVGEYVIIEPPAKVNRNKILAFTKAQVGFKYGILSILSIVTDIITPNWFPSMRRKNTWICSAVTGEALRYGGWLHNFPDIYCVTPAQLFDALATTP*
Ga0136642_10046288	F091222	AGGAGG	VKLIDTLTELDFVRESEGEFSNTYRANGFDLRSNVFVNESLNERHVQVCFMPHDPDDEPIWVTFSKYCSAVENLLKLWTVKND*