Scaffold Ga0136642_1001610

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1001610
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9486
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_10016103	F000857	N/A	MEKAMDEDVKVNEEYYTKGILEGGIDGVFRHNDKLFNEVKSGTWSQTFKTPNIDYKVGAINGQRYVQYDQKNVEAVRLRCKELREFYKEHGTDNPFFAGTAHMMELPKCFAHEISSKWFNNRPWELIKKEKQDKILFYAIVNEYYSDFVVHPSGKIPVPYNPIIPTK*
Ga0136642_10016106	F003521	AGGA	MKSLVLNIRNFFNRRTRVEDSKKEANVNRKTLVIENGESASRLMRNEDFALLFNLYRFYLLERLEDCRTDPERIDNAHAVAGVRDFIGFVEKTEYLGKVAIKTNT*
Ga0136642_10016107	F004695	N/A	QVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIPVSNSTEPIRGIDYIHPVVNPGVDYATAIITKCLMPNGKVNFEFERFSELDSEQSVQATEMVKYMINSKNDSYQIIRDWAQDALLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAADKGLTVKRQNMRKIDVDLAGAAQNAMGQEQQENPMENISDSLNTHTIYRAQYKMTGFSTSVRIKHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKAQFPYVDIEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWLRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDSNKHVFEFQPMQGNLAYVQSSMQRFEADKMAMIGMTSPSDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLIQYADDYNIQQLANVCAQGKPFMDAASMNNYEFIDRKLINIDLALGFMSDENRLTRQQLIGQAQQAFAQSVAQLDPSVPELFAKVRRPYEDTLRVLGVKDVDAYLPTLEEAAKMFQSKSQQPPTPEHDEINSRTALNKAKTDETVAKTMFTQKKAEDIDTDNMFEMMAAKRGKLSAVEID*