Basic Information | |
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Taxon OID | 3300013285 Open in IMG/M |
Scaffold ID | Ga0136642_1001457 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10142 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (62.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lower Cathedral Lake, Yosemite National Park, California, USA | |||||||
Coordinates | Lat. (o) | 37.8453 | Long. (o) | -119.4233 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020169 | Metagenome | 225 | Y |
F031870 | Metagenome / Metatranscriptome | 181 | Y |
F074374 | Metagenome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136642_10014571 | F020169 | N/A | DDSVYRWDEVCARAIECFGLPGGRFTTHANTDFMDFVFVSNKDALMFALEHNGRIVPDDELTVELVGKFMQ* |
Ga0136642_100145715 | F074374 | GAG | MSKSVSASLAPFDPSAGLADKRIPITDVAKQISKRIGEKIQNKEDVSVMDVLKFAWVPADKIFINYKRQRWPEPKHMSKLHGKWNIMCVTPLQCRYDPVEDRYYGADGQQHMTVWLVKYGLLTKVPCFYVESTDENVESIQLLALNTDSEPMAKYFIHHQKIMMGDKDAIALEKAVTNANCETAYKKRAPGCITHISHLQDAYENYGAGALTLVLNKMRQFWPQDKIEMPTALGFLKVREILVNDGLWNDSTFNDVVFECSNYSETNKDLHLGINHAFQATYPTNYKGMGVREKIASGIIDIYEKANGVTLCDKPFDISMPTVSIHVEDEETEEA* |
Ga0136642_10014577 | F031870 | GAGG | MIDYTDYMVLPCGGVAYYDEPVHGMNYFCAQCERRVCDMSNACKREEDKWDLMQLLGGKGWDYFAEPDEFF* |
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