Scaffold Ga0136642_1000710

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1000710
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16011
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F011665	Metagenome / Metatranscriptome	288	Y
F026556	Metagenome / Metatranscriptome	197	Y
F026795	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_100071013	F011665	N/A	MQNQINLTPITQFTQSLRAAELGNSKEVKLPIQQARFLSMALNEIQDKLLQDYEILYNALKNKTENESVSVAMDGGGFTDK*
Ga0136642_100071025	F026556	GGAGG	MTSALIKLLFAIALVVVAIAVGPILGIWALNTLFPVLNIELSWQTWLAFNILFSGTIAAKLTK*
Ga0136642_100071027	F009462	AGGAG	MELHESVRNTYTETVIKESEGFRLVLKKHAVLKPYGVFSVDMEQQSLKDGAVIDTATYNFLMTREEMVTLASALVA*
Ga0136642_100071031	F026795	AGGA	MAKNYKDYSYFENRPDVVKIFDDLEAFHNFCRMEMHPFDESHLYNRESWVWRNFEKSRRPKKPYTGERKPYLGKNPRNNHERISN*