NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136642_1000616

Scaffold Ga0136642_1000616


Overview

Basic Information
Taxon OID3300013285 Open in IMG/M
Scaffold IDGa0136642_1000616 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17484
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (72.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Lower Cathedral Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.4233Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019426Metagenome229Y
F028070Metagenome / Metatranscriptome192Y
F041564Metagenome / Metatranscriptome159Y
F042147Metagenome / Metatranscriptome158Y
F064358Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0136642_100061617F041564GAGGLEYDPSDEHHRELMEYLLAEGAAMLDGVDEDGEPVYMFDMDILEEVMPELHAVMQEDMDQVLVDLYQKGLIDVSYDEDLNAIMAISEEGKKSLIEAGFSLDDEKDTEQ*
Ga0136642_100061620F019426AGGMKVLIFGSKDWTDYNDLIRQVTLLIEDNKHIYPDDKEYLFVHKGLKGAENMITEYIGKTEKFLRQKGYKIKEELIRDKSSFSDVTMIESEPSIALIFGDCPRNRQCMKVLDAMEIPYRYFTE*
Ga0136642_100061624F028070N/AMAKIKYTIDMAKKIREIKVPVKGLKMDVRARPNYLALTVYEDNVMEYNESQRMQLMKYLLLVRQLIISYGSPCEIEGIKSSNV*
Ga0136642_100061626F064358GAGGMLCFSCSKQKNELHPCQSSILEGVNLFMCQECIDGKYEPRWVVILGGRQKGSDAVRDYIIKRRYYGRPISAEEIIA*
Ga0136642_10006166F042147AGGAMLANGTIPTIEDEEDIYISLTALCEYFAQSSVNMKQEIKHSNPADQRYARGLYDMMHTIAEETVELGKYEAQRRMINSPEDLLKMIDKNPFGKVE*
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