Scaffold Ga0136642_1000565

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1000565
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18548
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (63.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003826	Metagenome / Metatranscriptome	466	Y
F004641	Metagenome / Metatranscriptome	429	Y
F039621	Metagenome / Metatranscriptome	163	Y
F044497	Metagenome / Metatranscriptome	154	Y
F073096	Metagenome / Metatranscriptome	120	Y
F089888	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_100056510	F073096	GGAG	MKKLLLIAVICLNGCSTITSLWPKPHDPVMFDNLVSTKIAVEKLNCDDKNWTDAENKIQHLKVYSELRKDPQAISIAQLQEAINKAKASDKKLFCDSILKINKTRIDVITDAWRGR*
Ga0136642_100056514	F089888	N/A	MKTIGLLLLSFSMHANAQLFKYNYEINCGLIMPIIKFLSETQQEKLSWTGLDLADGSVYSLWEDKEGNWTLLKKTPEIACIVGVGTKLKVI*
Ga0136642_100056515	F004641	N/A	MAEENKQDQKGAFIEKLLFALLPLLIGSTGYLISALGAIQHDVTILNQKVSLVVTTDNKQASNSGAELAREKLRQDLEKEIQKNRDTIFENRQHIAILEDRMSIRNKIAPIKSE*
Ga0136642_100056516	F044497	AGGA	MYDWILLLALVQEPVKKWPEWECVRWSWTGDVYERRVVCLEWRKRENRWIP*
Ga0136642_100056517	F003826	AGGAG	VDPITIGLAFAAAQSAVSHIKQAIALGKDINSLVGQFSKFFESSDAIHRERIKIKAKGSILGKTDAELGHEALQIAMHSDALRQAERELKDMILWQLGKPELWEHMIKERTRLFKERAEAHRAEEERQLVHKKKLADQFMFAMYFIGFSIFMFAFVAGGIGIYGQMEDKRIYEQKVADRQAVIRRQAKERADKEQAEREEYAKGSK*
Ga0136642_10005652	F039621	GGAG	MIKILLPIILIVLVIILGPVATIWSLNTLFPVLAIPIGFDTWLAALLLGGVVGGTTGLSFKK*