Scaffold Ga0136642_1000373

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1000373
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24996
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (46.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Nematocera → Culicomorpha → Culicoidea → Culicidae → Anophelinae → Anopheles → Cellia → Pyretophorus → gambiae species complex → Anopheles coluzzii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066440	Metagenome	126	Y
F093245	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_100037318	F066440	GGA	MAGTGKRHHLHEALKKVAAIRGMPLLIQTKSMGTGAATGDVAEAGATEGGAGPEDAEAGQMSMETSLIHIGLDIARMSMQDKHILRPILAKLGQGSQVMAGQQGRGSRIIVLYHAHLLSSESVLLIQACLEQNEGDLSIWVTSELPIPQRIRDWFVEISVGGDDRNFTTYRNTITSTPTPVNWPGIFTAVIDKWILRGPPRLQEVKEIKALVYDMLMRNLRWAEATHFLLDVILTHPTITTEQRRAGVNALAVCEATGGGYTIPSYRIPILWESLFLQLRTIFVKEMAIVDAPPVVGRISKTSKRRLVKAPAKLAGV*
Ga0136642_10003739	F093245	GAG	MWPAEVKAVYVLCHPVKEQARFERIIPHLLERGIPKDVIHISAPTWGEDLTAEQIFSAYDPFLPRGTPSLTFKAGNLSRGEISLGMNFAAAVAAAAAGPEGLIITLESDVWLRADFVPRLCDLLTDVAGRPWDYISLGEGVGTRPAQAPHSYYAPTRVYKPPHQWVFRCTDSMLFTTNYMKRLTKTFTPFKEIIDWEMNYQMLHHKGVPLWADPPIAEQGTCNSRLVTSLPA*