Scaffold Ga0136642_1000276

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1000276
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30012
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (84.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F020485	Metagenome	223	Y
F026194	Metagenome	198	Y
F035995	Metagenome	171	Y
F044873	Metagenome	153	Y
F079523	Metagenome	115	Y
F080791	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_100027626	F035995	GGAG	MSVVTPVQVEARLKDLSKLIDEAHNDLVDAESAYHQHKADYEIAMATTRLSLANKSSPTGKNYTVGEREDMAILENREAHRIVAGDEAIVKANRANVARLRVQVDIARSIGTSVRTGMDVS*
Ga0136642_100027627	F020485	GGA	MKLLCKGKQHWEINNGKLILGAETDELLAEQLTKMTARLEAEIRLDIYEQICAIDFTNNRKLIVKSGIENVALQVQDMCAQIAIGEAK*
Ga0136642_100027640	F026194	GAGG	MPYVNQPPALRDLFQSLDARINKLETANRFTVPIVTTDPTNYRNGDMWYNSTTNILKFVNSAGTIKSITLV*
Ga0136642_100027650	F080791	AGGAG	MATYQYNGDDVREFPTLKLTVKPGDTFESADEVISANVTLASAVKKTTPAPSAAPDSTVGE*
Ga0136642_100027651	F002722	AGGA	MAVGRSQLRSTLYSYLTGASIATLNQIFTSFPKRINYQVNATAGQMSRAAAVIFIQSERETRLAIGGATNGWKRVDFQVILQIFHHSVQNNAEDAMADFDTLIDNIKNTLRASHNFGDTSQVNVWQGAEPVIDCLYGEPVTSDNGATETFAEIRFDVTQMIQA*
Ga0136642_10002767	F044873	AGCAG	MIPMIIDREVITLADIDEAIAHLAVMLKDRYGNRITHQRKAFLMGELDSLLDARLEAISNGIGNSSNRESESRLAERAETLKP*
Ga0136642_10002768	F079523	GAGG	MVDELWTSQQVVNHLQITINNLRQLQFRKTIKWVKKEGKAVFYLADDVKAYKEKREARKAVK*