NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136642_1000227

Scaffold Ga0136642_1000227


Overview

Basic Information
Taxon OID3300013285 Open in IMG/M
Scaffold IDGa0136642_1000227 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34081
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (80.60%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Lower Cathedral Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.4233Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013252Metagenome273Y
F036080Metagenome / Metatranscriptome170Y
F043832Metagenome / Metatranscriptome155Y
F051683Metagenome143Y
F053035Metagenome / Metatranscriptome141Y
F058556Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0136642_100022711F013252AGGAGMADQKGFRQTYQETGKLSSGGGPENKNLDAGSSGSKRANNAVLNQNKMAKASKVGPGKNLKDIGGGNFY*
Ga0136642_100022746F058556GAGGMNTFVVEHEYKGHPMFETITGVEDIDLSMFDKILTLWVCDNQEEVNAVESELRRKHARRSK*
Ga0136642_100022748F051683AGGAMILELDDDFTDEITRVNLAESYVGVSDMMKNGDAWHEDDVKAWKELLPAIKLVGSWYSTDFDADIKKAKKRK*
Ga0136642_100022749F036080N/AMNSKIDLESAIMLAWQTSDDINLLYKHHGDHPVPMTEDDVGNALWGIKVLHDMRMEKLMDTYCRKMELNEYCIDPEKLAAREQLFKPKKKGNKK*
Ga0136642_100022763F053035N/AMNPFELRYSIFNTAKDLMIKQHEANIAAWEVLNKTTKEAEDLAPKFPTMEEIIDKAIEINTFISGSTTRELTSLAKKMTGVGIVF*
Ga0136642_100022765F043832AGTAGMAVRKYTFTQDMCDRMIKLGTQGASQKMIWADLGITKDVAANWRKKYPEFADALDMALVHSQAYWEREMLANVGNKAFNSRIAEIALRGQFPQDYKDVREIKADIKQEVKIDFAGEVNDLIKQLRANAT*
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