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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013285 Open in IMG/M |
| Scaffold ID | Ga0136642_1000226 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34175 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (79.63%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lower Cathedral Lake, Yosemite National Park, California, USA | |||||||
| Coordinates | Lat. (o) | 37.8453 | Long. (o) | -119.4233 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003520 | Metagenome / Metatranscriptome | 481 | Y |
| F015706 | Metagenome / Metatranscriptome | 252 | Y |
| F017817 | Metagenome / Metatranscriptome | 238 | N |
| F029022 | Metagenome | 189 | Y |
| F030650 | Metagenome | 184 | N |
| F037037 | Metagenome | 168 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0136642_100022613 | F030650 | AGGA | MDNKYEDKPGYANLFYTAPEDKKYPQSPDYDGSMILKMDYKAGEKIKIDVWNKETRTGKPMLSIKENSWAKEKALERAQPTEVTPTYKQAPKTGYRKRDDDQDVPF* |
| Ga0136642_10002262 | F015706 | GGAG | MQNYNPLIAYHAKREMKGWSEVCRYPANWEGWHEFDKSMIRELLNTGDQVVTCGWNMYQVINEVTA* |
| Ga0136642_100022622 | F003520 | N/A | VEKFTKMANNIPFQAMGKTYKANVTTSSQVITITPDGPCNQICVANHQPTGTGGQPVYFNVSNVTITCTAPSNGTPQYALVSVPGTIKVFTVPYQFSPSNPLYVAFIGEAASECYFTPGEGT* |
| Ga0136642_100022624 | F017817 | N/A | MSKKKEKGINPELEKAINKLMQEVMVDPVATIVDKMRVIDRALKLEALKMKDDDSAWGAGFMDDDGDE* |
| Ga0136642_100022630 | F029022 | N/A | MTTINEVDLKIDAHVDICAIRYEGIEREMRGVNARLKRLEGILIGCAGAIILLLLNIMTK |
| Ga0136642_100022654 | F037037 | GAGG | MMTELVIEDKVRMPKPRVVYAYPYEDMGIGDSFVVPLEARQKVLNANYRANKRLGLKFTSRTEGDVVRVWRVA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |