Scaffold Ga0116832_1004514

Overview

Basic Information

• Taxon OID: 3300013231
• Scaffold ID: Ga0116832_1004514
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 5m_Station5_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1726
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F103296	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116832_10045142	F008747	AGGA	VMAVGVPEMAPVDESRASPAGRDGETAHVVMVPPLEVGVTVVMAVPLVSVNEFGL*
Ga0116832_10045143	F008747	AGG	VIAVGVPLMAPVELSSDKPDGSDGETDHEVTAPPLEVGVAVVMVVPLVNVSEFGL*
Ga0116832_10045146	F103296	N/A	TTRVTGAVARPPVLLAVTVYVALDEVVLGVPEMAPVEESIERPDGREGETLQEVTAPPLEVGVTVVMAVFLTRESELGL*