Scaffold Ga0172421_118067

Overview

Basic Information

• Taxon OID: 3300013212
• Scaffold ID: Ga0172421_118067
• Source Dataset Name: Freshwater microbial communities from Saiful Muluk Lake, Pakistan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: BGI Tech Solutions Co., Ltd.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 261424
• Total Scaffold Genes: 255
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 163 (63.92%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location

• Location Name: Saiful Muluk Lake, Naran, Pakistan
• Coordinates
  • Lat. (^o): 34.8762
  • Long. (^o): 73.6934

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F005589	Metagenome	395	Y
F015209	Metagenome	256	N
F015339	Metagenome	255	Y
F018175	Metagenome	236	Y
F021538	Metagenome	218	Y
F056602	Metagenome	137	N
F076075	Metagenome	118	N
F076092	Metagenome	118	N
F078726	Metagenome	116	N
F081326	Metagenome	114	N
F085717	Metagenome	111	N
F090404	Metagenome	108	Y
F101175	Metagenome	102	Y
F103262	Metagenome	101	N
F105177	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_118067110	F085717	GGA	MNRFNDDFDGYNNRKHRESLSKKSKYEEEDLDELDIVSDDISEKFMGSYGIHNITPSKAKNAVVIYVDELSDITEGVKKEIEDMTKPYSAIIKSSKLKNDNQHLEKYFKH*
Ga0172421_118067115	F103262	GAGG	MNFNKNQFLWNFIYVCVANGVTFSDQDFYNFSRACNIKVDMKYAMENFFDNSLLKSAKDSSIIGSSSSFVMSKSLLGPCYVHPKGTNPKSVNYNISKIIQELKLDRQNISPDEKLKKITDYIELLS*
Ga0172421_118067119	F005589	GGA	MARFKHSFFRYIPSTDERQSFFKFVETFETDNDSVPKYDDHYCIDHIVNLDNGQMRVKNHSAPEYCVSKYVGWSLSLPPVEKTNKQEIYVVIHRSSFAHKRIEFDEFLEPKDKRYTQDEWNSLLSSIEKKFNRQKEWAKEGIRVPSQYEDGTQVFRAEEEFRAFSLGRRAYFLYHLVNSHKFTHLVRRLNIGYTSG*
Ga0172421_118067120	F021538	N/A	VDKTTIINCDCLCHSLHVRPDTELKTVDISLWNYGFNDGKLHWKKRLQILIDGFAYSDLVVLDKEELDKLIIALEEARGRIA*
Ga0172421_118067121	F018175	GGAGG	VEELPKNQKEYYHNKVREFEKRTGKSMNVKGVSKMYDCNIEYAIYDTPAAMNMMQKHGCYIYHSLLAEEDPRPNGTDWQMYAFAYVNGKVYKYYYETKQWGAEVKDFTHHQNEDKTWKAAKLDKANFPYTLDPGEDYLPYAVENKHIGSNFDDFLKTNKIELKRDINWAVKMLNAGKMMSREGNPSLTLFPKKYDHAESTITTEDLFAEDWVVVQSKSFKDVVDDLNAGKTIRRKSWHSDWGVGKYARYGKIIYLDLIADDWEVVDVVAEVDKIQKDLKDGKI*
Ga0172421_118067122	F015339	GAG	MEAEPRIYSEEYVRGRIWSFTRFNKYLRQIAHIFCEEFQYDKDDIIEVSLCDDGKTVWVHFDSGTIGFASELLWDNNVRETFRKNYKVD*
Ga0172421_118067125	F101175	N/A	MTGREVLTHLHAGYTLRRKEWEPDQKCKAYFSEDMWSVKININDPILGALDTHLVPQWVPEKPEFSNYVCYYDIIDNGDLLEDDWEIVE*
Ga0172421_118067128	F090404	GGAG	MKFSEVVDSLMAGKRVRKTNWESKTAFFLYDKEDNTFDFYEVLDGEVCRTQFYTELNLTPKDLMSDFWEVVE*
Ga0172421_118067175	F078726	N/A	MKLLYFTREGKAMNNVVFLEAPEIKSIAEKLKDRYYVYIGYVDLEQIYFAEMVGHTPRKAKPIVVNGLAQKWVRDLLLGDIQDKKIYCLGVYEEKWAELTKAHKEWALFAALYSISPQNDGSIRQFEVQDYAFILEYFIKNNYGANYMNHSILPSLLDSKDPLAIPLPPDPEDN*
Ga0172421_118067182	F081326	N/A	MQSSDWNKKKRQFLEDYFTTDDISTSDFFKVDSNESQNKKYAAGTPWTTLIRDSSLVNSRVFVRDNYHNHDIFSTDNDQANAILSCAVKKATYMISEETERDYHEIYEAIKNYFSDNGMSGKEVKAIIKLLRDLDHEELFN*
Ga0172421_118067235	F076075	AGG	MWYRKAMDLSNLNREFSIEKENAVEDYDEQSMKESVEDLFAKVRAGEEYTSPSGAIKVMPPREEPPFTDEEVDGRFDSESTDAYDVYEGIKEFPSTITTLKNTAQIISRYIDSGVLQEFNRKIDSLSPMLEKIIQSAFEKVQLIESSFNNPELSRQFDREGYPKLTEAEVMNSNILTLQITKAINELYNSIRNEDARQEWLNTMARKSVAANFLRPADKTRYKETMNNIWGL*
Ga0172421_118067237	F076092	N/A	MNAILIFLLLVDPKVEFRDRCIKCHEPAAVLFGGKLKTKDLRKTIYDMYRVDSSEKPSKAQVDSMLKYAKSLKKN*
Ga0172421_118067240	F105177	GAG	MTEQGIQKAFETYKSKGGSASQDSFASQFKFLIGRMLEGFTNNMGVAIAEEKYKTNNPFWDPRD*
Ga0172421_118067248	F056602	AGGA	MSNWTKGFICVAIASHAFLFVILFGCKLGDAFYISGVDLFGMVMSSACSLVYIPAILVSYDSDKTRKKLDEQLQA*
Ga0172421_118067249	F015209	N/A	MNNYRHKALSLWSALLAEEREHKFESTNCKPSCKGWNGWAPYCECFENHCTFVPKGNIDDMELVIIAKPIDEVLRNIQVIP*
Ga0172421_118067254	F004583	AGGAG	MKSARNSDRLREILLSTRHQIVALKDIQIDLLRHDAKVANQVATQISALEEVYKHQLSLVTQAENAEPKRNGWFSGHIKTKEDRLANIMD*