Scaffold Ga0172421_117842

Overview

Basic Information

• Taxon OID: 3300013212
• Scaffold ID: Ga0172421_117842
• Source Dataset Name: Freshwater microbial communities from Saiful Muluk Lake, Pakistan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: BGI Tech Solutions Co., Ltd.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65887
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (59.46%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location

• Location Name: Saiful Muluk Lake, Naran, Pakistan
• Coordinates
  • Lat. (^o): 34.8762
  • Long. (^o): 73.6934

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F015339	Metagenome	255	Y
F018175	Metagenome	236	Y
F021538	Metagenome	218	Y
F033793	Metagenome / Metatranscriptome	176	N
F038678	Metagenome	165	Y
F049636	Metagenome	146	Y
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_117842104	F006220	GAGG	MKRKKYVEDLNIASGTEMMRASQMRPTTFKDKSKYNRKLKHKNRQDKNSGDSFFC*
Ga0172421_11784238	F090404	GGAG	MKFSEVVDSLMAGKRVRKTNWESKTAYLIYDKEDNTFDFYEVLDGEVCRTQYRSSLDLTPKDLMSDFWEVVE*
Ga0172421_11784240	F049636	N/A	MTGKEALSKLEEGFTMRRESWDPDVKCKAYFSIFNKTIPESVPDDPEFDEYISFFDCLDNGDFLEDDWEIVGR*
Ga0172421_11784243	F015339	N/A	MNTDPKIYGEEYVRGRIYSFVRFRKYLHQISHIFCEEFQYDKDDIIEVSMSDDSKTVWVHFDSGTIGFASELLWDKNVRETFRKSFEVD*
Ga0172421_11784244	F018175	GGAGG	VDKSPKSQKDYYHNKIREFEKRTGKGMNVKCVSMFYDFNIENAEYNFQAALDMMFIHGCYIYNDSMVEEDPRSNGTHWRKYSFAYVDKKTYIYYFETQEWGKEIDAITYRQYHNKTWKAGELVKTKFPYSLDPGEDYLPYAIENKHIGSNFDDFAKENNIELKRDMNWAIKMIESGKMVSREGSPSLTLFPKKYDHAESTITTVDLFAEDWVIVPNKTFKDVLDDLYAGKTIRRKSWHADWGVGKYARYGKIIYLDLIADDWEVVDVVAEVNNQQEQILKDRNEH*
Ga0172421_11784245	F021538	N/A	MESTIINCDCLCHSLHVRPDIESKTVDISLWNYGFNDGKLHWKKRLKILLNGFAYSDLVVLDKEELDKLISALEDARGQIA*
Ga0172421_11784252	F038678	GGAGG	MKLNFEKIGFYLLLVLISGSIGYALKPAEQVDQKELERKYQNQQQVCTAAIHMMQDFSKKNYYQSKTKKEWAIERMMSR*
Ga0172421_11784297	F033793	GAG	MILGQDPTSTRPIGTEKTLKEAKEYILSRAYNNDYCAIYVADNENPAGELVGRWIVKNKKLTSFEKKSKPIDYKKVIF*