Scaffold Ga0172421

Basic Information
Taxon OID	3300013212 Open in IMG/M
Scaffold ID	Ga0172421_117126 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Saiful Muluk Lake, Pakistan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	BGI Tech Solutions Co., Ltd.
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013212 Open in IMG/M

Scaffold ID

Ga0172421_117126 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Saiful Muluk Lake, Pakistan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

BGI Tech Solutions Co., Ltd.

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15090
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15090

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (68.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location
Location Name	Saiful Muluk Lake, Naran, Pakistan
Coordinates	Lat. (^o)	34.8762	Long. (^o)	73.6934	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saiful Muluk Lake, Naran, Pakistan

Coordinates

Lat. (^o)

34.8762

Long. (^o)

73.6934

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F039641	Metagenome / Metatranscriptome	163	N
F049628	Metagenome / Metatranscriptome	146	N
F050378	Metagenome / Metatranscriptome	145	N
F059968	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_11712614	F049628	GGA	MKFFEVMQPLMHGKPITRSSWEHEVYVRYSDCFEAFVMHTDGESKTLQGLTLDPETMFADDWMWGEFHPVKDEIKWTQTKS*
Ga0172421_11712615	F059968	AGG	MKVAKNTDIEDRTALLVRIKNLRAAGHSISRTAQIMCMTRGTVQRWINEDQPDRIVKKMNPYVSIDEKIAIVVKWAELIASGVSRSDAAASVGFPTMMLNRWLMSEPSLRVEFQETVGKKQNNTGRKSFETIMTDVRAGRPVWRDGGRFKLQLVEAALMRYELDGANVWRCKGFATLTGTDVLARDWTVVL*
Ga0172421_1171262	F006623	AGGTGG	MNLQNYRLEPNPNTPGDWIVFGDIYDNDDNLIGTYGPDGTSMFAWWVTQDSNFQFNYAVQFSQIMAQEIADGVAE*
Ga0172421_1171263	F001733	GGAGG	MSSISIGRLVVVVLIAFVASFSTVFGDGIRTAEAKDIAELGAVMTLYGSKAVAAGVTAAMSAALGFLTMPFKGVQANSLKVGK*
Ga0172421_1171264	F050378	N/A	MIRVLRGVCMSLEMWVQIGIQAVITTVSIGAAWVALQVRLTRLETQVAHIIDTLDGQQQEVRRIEQRLGKLENKVSALEAIIQR*
Ga0172421_1171265	F039641	N/A	MIPAAYSNALKNAIQAYSYADRVAIWRTVNQSDGIGGISQHWIQVAEIRATISNTGDTEGIVGGMIEQSGTWTLTCSPDIEVRADDRIYTYGNPQALSPYYECIGSDYGHTNAVSQTIALRARTNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0172421_117126

Overview

Ecosystem & Geography

Associated Families

Sequences