Scaffold Ga0172421_111709

Overview

Basic Information

• Taxon OID: 3300013212
• Scaffold ID: Ga0172421_111709
• Source Dataset Name: Freshwater microbial communities from Saiful Muluk Lake, Pakistan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: BGI Tech Solutions Co., Ltd.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13144
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location

• Location Name: Saiful Muluk Lake, Naran, Pakistan
• Coordinates
  • Lat. (^o): 34.8762
  • Long. (^o): 73.6934

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032541	Metagenome / Metatranscriptome	179	Y
F053885	Metagenome / Metatranscriptome	140	Y
F061834	Metagenome / Metatranscriptome	131	Y
F066569	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_11170919	F066569	GGA	MNREQYIQMRKTGQYDLGWFYQYFLENKDSNRVTPPFELFQQVFNMYFQMNGPFILEFMDKKMEVSKIENAQGQLIYIN*
Ga0172421_11170920	F053885	N/A	MDGKVKTPKELMADMNGNYIQVIMKNGKVHQKLFKDPQRAIRAVGGVDNVKYMREILKEQVNAKYVDADSLTGIPEGEL*
Ga0172421_1117098	F032541	N/A	MSLINEIKQMLSEVTKVNFKGNKFVLKIDVNEDPNKKGIKVQFLPTTFAGMSKQQQDEIAMELGAKLNQGLAQLGLTVERDRELKDKTILGFFIYIEYLDKIIINALNQAAQPSND*
Ga0172421_1117099	F061834	N/A	MVLKKELRKTLNNYLKGSVQIKERDMARDIMEKKLFIESIILLREIEDRRDFMEEEIGMDMSMYEEKFLQIIENLFRVHFTKEQFALIQYYLYKVPTIEDWDGLIDITDGKEMITVKFETPSQVWNVINSLK*