NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0172421_103298

Scaffold Ga0172421_103298


Overview

Basic Information
Taxon OID3300013212 Open in IMG/M
Scaffold IDGa0172421_103298 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Saiful Muluk Lake, Pakistan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBGI Tech Solutions Co., Ltd.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1768
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location
Location NameSaiful Muluk Lake, Naran, Pakistan
CoordinatesLat. (o)34.8762Long. (o)73.6934Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006463Metagenome / Metatranscriptome372N
F009958Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0172421_1032983F006463N/AMKAGTIYDQLDWWQRQWRGSFDLGLYLEICRIKKNENQKQKTMKRFKATFKTWAYIGAPMKLETRIVEAYDFQHVKNLIQKNDDIIIQIEEI*
Ga0172421_1032984F009958AGGMKNRILEIHNRSWNLSYDFAGWQYSIAGTWEFNDYDEVSEFAFIELDVEVSEKWIIETDDHLQPHVLGVRLLEDLRLEMQEAINSDLENYDFWEWKVSNDDSNYNFYHEL*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.