Scaffold Ga0172421_102510

Overview

Basic Information

• Taxon OID: 3300013212
• Scaffold ID: Ga0172421_102510
• Source Dataset Name: Freshwater microbial communities from Saiful Muluk Lake, Pakistan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: BGI Tech Solutions Co., Ltd.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17941
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (48.39%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location

• Location Name: Saiful Muluk Lake, Naran, Pakistan
• Coordinates
  • Lat. (^o): 34.8762
  • Long. (^o): 73.6934

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F029440	Metagenome	188	N
F060914	Metagenome	132	N
F078699	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_10251011	F078699	N/A	MIYLNRGNDMKVNFKVAGTMEIPDSAILHEDYLHQIFALEFNNKMYMLQMCLVAESPSGEYDMVHQFEEMEEHDIKNVRYDAAEFEPVVED*
Ga0172421_10251014	F002406	GAG	MKYLKWIRAMADRLRDELSSEYDDETKDLIIRAFMQGLYHQPAIVEELKSSSLIESDYFDDE*
Ga0172421_10251017	F060914	AGCAG	LKRIIKIRPDISSSIFPIELYQVDDYFTAEENGVELFRFKSQHLCSIKAKELIRKRKNEKNAQIIQNIQELKAQGIL*
Ga0172421_10251018	F002398	AGGA	MMLPLISILILSSLDPINNFVSLKTYVSNNAQKHCQVYFIDENIPNFPRVNLIEENRVKFFEYLDTIGIEHIQVGGYYFFRKKNNDNYE*
Ga0172421_1025105	F029440	GGAG	MYDLAVKNNKFLHIPPRELKRKDIDWKMRPICDRINASDYCWTVFCCQGHLSGNQKGGLPYLSLLCVNEKRPYILNQLYSAFEVDEEYNKNLPLCGPRTNMMLISMGIKDENFTYITIHFNAQGKNDQDYCVKIMDRFSRAI*