Scaffold Ga0172421_100310

Overview

Basic Information

• Taxon OID: 3300013212
• Scaffold ID: Ga0172421_100310
• Source Dataset Name: Freshwater microbial communities from Saiful Muluk Lake, Pakistan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: BGI Tech Solutions Co., Ltd.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16738
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (46.15%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location

• Location Name: Saiful Muluk Lake, Naran, Pakistan
• Coordinates
  • Lat. (^o): 34.8762
  • Long. (^o): 73.6934

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011390	Metagenome	291	Y
F011760	Metagenome	287	Y
F039635	Metagenome / Metatranscriptome	163	N
F053301	Metagenome / Metatranscriptome	141	N
F054860	Metagenome	139	N
F076096	Metagenome	118	Y
F095470	Metagenome	105	N
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_10031013	F053301	GGAGG	MTVKEVIDLLETIAQKEGYNTECIVEIEEQNYNTEAKVHTVCTVGYQDGTKKICLLGIKGEESDEE*
Ga0172421_10031015	F054860	AGAAG	LNISLKNTRINNLNSEETVAFNALLCIDTKPFAEVSNDGKGGENRYRPLGDSMDWIYNHALVSQFREWCSIQPPVYDPHSGNTYKFDADLYVNDCLTEYIGNQYEVAVS*
Ga0172421_10031027	F103253	AGTAGG	MEEKVWIYLSKTGTGFQLAGADIISGFDAFVNADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIYGNYQRQNILTGFAKNVDIPENLKKSISENYTFEEEEMERAIS*
Ga0172421_10031031	F095470	N/A	MRVDMKKVMWVSDSLEPWNHSHHYEPLIEDLTGFNLTENLCSQTVKYMAKRLNDTPYQRRFRTKYSIFENEYVALVEKFNIQADNNGKIEVK*
Ga0172421_10031033	F011390	GAG	MMKIQTTNYGLCSVKKHKYQTNGNLALSLIDEDGCPVTYISTNVFPMGENEFCANYYNMGATLWNDIANSGLFEQTGEKVPSGYCEYPVCKLIVDID*
Ga0172421_10031035	F011760	N/A	MENTTTQRMVLRVRIQDVSDRSSAIEYVGQGTWFDGKPYIVTRYKSSQTNFYFFVYDSFVPEYNYFDAIIGKEIWDLNPEHGNHSGKTFIYSTMLDKMYDPYAMSSVLNSPCCLFEIM*
Ga0172421_10031038	F076096	AGGA	MIWYDKQWENPLYWFDKMLTYSGHARLRTLERNLPFVDFLPVDSKYLFHIRKKDVFSMTFKTTVKGKRMEIAINSIGVVMTVYPVINSTADKFQFKYKQYLGAFKKPDDYMPPIIIESDLSGEDCIDSELFEEM*
Ga0172421_1003108	F039635	GGA	MTQTQAEKLKIKVEAFNELYAPITLRFQMFSTSETNWAVTITYNYTPEEWMTFVSLDSNYNHVNDRLSGFQFGIEAVEAYQEENGNLKFSHSDLPLG*