Scaffold Ga0116815_1046443

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116815_1046443

Scaffold Ga0116815_1046443

Overview

Basic Information
Taxon OID	3300013195 Open in IMG/M
Scaffold ID	Ga0116815_1046443 Open in IMG/M
Source Dataset Name	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station7_GOM_Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	608
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location Name	USA: Gulf of Mexico
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004071	Metagenome / Metatranscriptome	454	Y
F056059	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116815_10464431	F056059	AGGAG	MTIKKSSGISLTPPEPITPENIKDKIISDDELRQKIINGELVDEKLEATLFPNGKPDK*
Ga0116815_10464432	F004071	N/A	TLLFMGGGFAEVPARLQPYEFCSDKVESIITYKENLNYSENNYDVWVHATYNDRKIFASYCKTPDGQYFVSYYHPEWEENKSLDILD*

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