NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116815_1046443

Scaffold Ga0116815_1046443


Overview

Basic Information
Taxon OID3300013195 Open in IMG/M
Scaffold IDGa0116815_1046443 Open in IMG/M
Source Dataset NameMarine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station7_GOM_Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)608
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location NameUSA: Gulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004071Metagenome / Metatranscriptome454Y
F056059Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0116815_10464431F056059AGGAGMTIKKSSGISLTPPEPITPENIKDKIISDDELRQKIINGELVDEKLEATLFPNGKPDK*
Ga0116815_10464432F004071N/ATLLFMGGGFAEVPARLQPYEFCSDKVESIITYKENLNYSENNYDVWVHATYNDRKIFASYCKTPDGQYFVSYYHPEWEENKSLDILD*

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