Scaffold Ga0116834_1002617

Overview

Basic Information

• Taxon OID: 3300013188
• Scaffold ID: Ga0116834_1002617
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 6m_Station1_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2697
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020852	Metagenome / Metatranscriptome	221	Y
F022603	Metagenome / Metatranscriptome	213	Y
F081199	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116834_10026171	F081199	GGAGG	MQNVVNYPYFICNLTTGKASAFATYAEAEKALILLNTNRDAFIIVDTEERCLEEI*
Ga0116834_10026172	F022603	GAGG	MQNVYVLQLQGTGDDEYAWEVANVCANYEDAIERLAAINAEYTEADDFAFTLDDNARIETHTLVDNNWGY*
Ga0116834_10026174	F020852	AGGAGG	MLTLKNKTVETTHADEDYTCVVTHYDAEGYAECDGTSIWGYDGDLRVAVSGVSVHNETYEDGDTSTMIYVEHNANGNGDWRIYTDRGFEDSISKALGYDVTFTEQGMQDDGIASLET*