Scaffold Ga0116834_1000143

Overview

Basic Information

• Taxon OID: 3300013188
• Scaffold ID: Ga0116834_1000143
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 6m_Station1_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9824
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F007006	Metagenome / Metatranscriptome	360	Y
F020467	Metagenome / Metatranscriptome	224	Y
F072868	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116834_100014310	F072868	AGG	MYFKLTSKNAYRDLVRNARRISISELSESEKREAFQELYDTLKARLGETTRTLNAEAAYARRCMHWNQRELPDIQPVTTVRNPWLRFKREFVNAIQSENPSRNIQIALAWLYQDSSRDDWITT*
Ga0116834_100014313	F020467	AGGA	MHKRPSLSEAKAFLTQHAPDIMDEYRELLTSHGEFFAARYIVDIVDHYNHLNNVGVVNG*
Ga0116834_10001437	F005315	N/A	MFIISCGDSYTEGEGLVDKQQAYPHIISRALKSKLENLAQSGASEYLITTQVEQAVKKKPDLILIGHTSEYRWQVWDVRKNHWQGFLVANHVIRNEKYYRNWVFSEQILDNNRKNDKRHRAAWHAAGMLYFSDEELTQRLWSGAVSKQILLCQRAGIPVIHHCCFPHLQANLEELTDDYVDFHLDLEKHKNPAPDGSHAGFRSHQKLAELIMNKRQQIL*
Ga0116834_10001438	F007006	GAGG	MEAALKQEIKAEISRIVDLMIQAEAIREQMASLKKDIKEEYGIPVATITKVATIVRKQNLSEEEDKWEEIKEFVDACS*