Scaffold Ga0116834_1000005

Overview

Basic Information

• Taxon OID: 3300013188
• Scaffold ID: Ga0116834_1000005
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 6m_Station1_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34661
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (70.59%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F007417	Metagenome	351	Y
F008281	Metagenome	336	Y
F008346	Metagenome	335	Y
F008595	Metagenome / Metatranscriptome	331	Y
F012117	Metagenome / Metatranscriptome	283	N
F034894	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116834_100000515	F034894	AGGA	MNVTFNLMGGGELNIPARAISGFYKDEFTSEVIVEVNGDEYKVRDSLDEVRYILGLAK*
Ga0116834_100000520	F008281	N/A	MNLMCNTKHGAIEWRWKDSGQPSPEYKSLNHQWWIPKKSEFELVTKVDASIKQEIKDEIWEDMQSDFEYQKGIYKIHKLNKKNLK*
Ga0116834_100000522	F007417	N/A	MTRYTLQVQLPSIGWVVAIKTSDLFYMASKRARLIKEGHKVKLTKEKKNG*
Ga0116834_100000525	F001942	N/A	VPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFIFAAENSRSMSETYKHYTCDILAFVFFDEDKKRIMFKANTSSQNYFTFDKKAITESMELDSLKETLDNLSSVPVLNPII*
Ga0116834_100000529	F008595	AGGAG	MSKEENKMENQEPVIITFNNVEYRAADLNEEQMALAAKLNVAGKKLARLQEHYDDYVITNEYKNLVIESFDRAINAEEEVEVVEEE*
Ga0116834_10000054	F008346	N/A	MLTGIRYLRRRRRMPIKLKPSAKIRDRATGKTRTEHYYLKCMTLKELNDYIESPSAKKKVIQKCKNEIIRREK*
Ga0116834_10000058	F012117	AGGAG	MDILGGMSSSNSESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPATFKSGWGRYTRADGFEYQWDEKFGVVSPKPAEDFKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNSLLATFWNQMDASSTSLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSDGFVIPSWYLDQEAPVEDTFKSPNDGLSDKVAEMIEQNDDDDIPF*