Scaffold Ga0116836_1009541

Overview

Basic Information

• Taxon OID: 3300013181
• Scaffold ID: Ga0116836_1009541
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 9m_Station6_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 880
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F029123	Metagenome	189	Y
F053632	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116836_10095412	F029123	AGGAG	MKYEVWFGQNGKWFGYHSFKHKMDAERYEERYKKVFKDLTVEIRRKEYGYC*
Ga0116836_10095413	F006217	GAGG	MIELLLAMVEEQNPIHKYCMSKHEHWTGRAACVQELRHAQRKLEVERLRQFLKDNPHYKYPGMALPNGKIKPLDVCWGSAKTYGTNKERRC*
Ga0116836_10095414	F053632	N/A	VNTEEDGGYNMKLYKNSEGVWAGTQADARKMCGKGYQTVDVPTDKPSLLRFLNANKVGTSYPSNDKEFEPVYAPDTDLDKKALSYFEWGYDKLRSGEFADGTEFIRKALLYQKTHNIHEEVS*