Scaffold Ga0116836_1000176

Overview

Basic Information

• Taxon OID: 3300013181
• Scaffold ID: Ga0116836_1000176
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 9m_Station6_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5510
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010536	Metagenome / Metatranscriptome	302	N
F021540	Metagenome / Metatranscriptome	218	Y
F036728	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116836_100017612	F021540	GGA	MKVIDKIYDFENGDKYVIETKECLHCRQTGTVEIFTQELFYLNQGYHIQDAVKSLDKHYREQMITGTHPRCWIKMFGEEE*
Ga0116836_100017614	F010536	AGGAG	MIDVMLSKATTGMIIAELLGRKDDKEQPLFMGKSIVLSNGQLQLLAILPNVQVLTTVEQEEE*
Ga0116836_10001763	F036728	N/A	MVLKQRLNLPLDCRWIFVNYNNNLKPFKTTKEVLHFIEGNRLEVVDQQSMQGIYIVVVKKADSFL*