Scaffold Ga0116836_1000028

Overview

Basic Information

• Taxon OID: 3300013181
• Scaffold ID: Ga0116836_1000028
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 9m_Station6_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11644
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027831	Metagenome	193	Y
F032237	Metagenome / Metatranscriptome	180	Y
F053965	Metagenome / Metatranscriptome	140	N
F077161	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116836_100002810	F053965	GGAGG	MGKLADAIKAYKIAPINSPAEREAKEIIIQITESQWWKDNVGREFKMPKKYDNKKQQAIFTEPQFVFIGNFIFGRHEFCENCRLYKGLLTYTNGQMVYAKPHVT*
Ga0116836_100002814	F027831	N/A	MPRGKQSGIAFGQRTKQKGQSDLDQLIRLKQFLKERFHMDFKREWYAGFDKEYGYLCRISESVGRKELERFKWKNPDLICYDKQHGIIIVELDGAIHDRKVRKTEERNELFRGAGIKLVVLNIADIKECGQTVIERLEQEMLKLVGQH*
Ga0116836_10000286	F032237	N/A	MSEENRFIDKTTSLKTVERVKFSLKNFSKGSKIEISWAFNPEDSSHVDQFLETDPEKNNILTALQGFKKLCQDNLGVKILEDE*
Ga0116836_10000289	F077161	GGA	MRNLTLPEIQARFDRNAKLHRFEVDKLFEKVKHKPFTEMQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYCGILRDIVTEEIEHVQDSITKSDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTNQQDLIPDYGYQFYGDTWRMMKSTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWKKSMDYIIDHCVKDVRMTYEGLKRAELFNNIGRAKA*