Scaffold Ga0172371_10123681

Overview

Basic Information

• Taxon OID: 3300013138
• Scaffold ID: Ga0172371_10123681
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_12m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2357
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F014609	Metagenome	261	Y
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172371_101236812	F014609	N/A	MIPNGIALINELIAIIGLLLTVLVLVVKATYEITKMKSQLFPNGGSSLNDKVTRLQIDVVKIRGTIDSIEQQLGKPKRKR*
Ga0172371_101236815	F028786	AGCAGG	MKSKQSFNHKQILLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKTKNK*
Ga0172371_101236816	F001805	GAG	MATANKVFIQIDDERIELIGEAKEQFLAERKAEKDAKELLEAEYKAKQEARESAIKKLAEIAGLTKDEIQAIL*