Scaffold Ga0172371_10031442

Overview

Basic Information

• Taxon OID: 3300013138
• Scaffold ID: Ga0172371_10031442
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_12m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 6023
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035367	Metagenome	172	Y
F038201	Metagenome / Metatranscriptome	166	N
F045645	Metagenome	152	N
F063278	Metagenome	129	N
F063304	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172371_100314424	F038201	N/A	VKAGPGSAAEPARVDVFTRNVQYMVSQVAGEHAARTFQMLQATFPGLRNFDQLRTFARLYVSTGLKPLQFRPLPSEVDPQRLKGELALRFHNGMIVLAPEERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDQGHALDPEACAPAAVGMFPLDLS*
Ga0172371_100314425	F045645	N/A	MGQDLHKCGTEDLDMKLQETMLTVLKSVAGVYAVRPIIRGKALALRQGRDGHELAQDEGQAVRVVAVSDVKPSLLSFAAINGIPVKNYTDMAVPKPKAPSAPKPAEVPELVM*
Ga0172371_100314426	F063278	N/A	MKERYLVIGFQPPTRRISLDSEWAESATDAMKAVAGMRKAADVLLAWTPGQMRLMADLLAAMTPQQIAFNRQTAELEERAFRASQTAPPQVRTAGPQCQPFLVISYNPDTEAVHLDPELNDSPDAALRSVAGIRGRAHVILAFTPEQLREMAANLEGLIAEQMARNRRAAEQEEKTFYAELVERQ*
Ga0172371_100314427	F063304	N/A	MRLNNSTPDRAVSPHIYNLLDQRLAQQGAPLHQLIRTYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETALAEEHLRLMDDINKIQGPEGASRLEATLVRVVANQFARNMGSALRIPDESKLICLSDVKPGNAYSAFAQRTALIGIQPHEWAKRWVESQRDLFRNKPSDAGYLRLAQRLSGAWPLEPGKGDAFQRALASFLDGIAASTSQSHAVVVQSSLLETFARAIRHQARDLGLDRPAAPSPAMSMS*
Ga0172371_100314428	F035367	GGA	MELIMPAAAKWIFILVLNAVLCGFFGLGIAVMHFLWLEYATVRWPKVRYTDDYQTSFALACAAVVFVLTTLRQIKTRLESKSLRPGEIGFILIFAAIVMVGLTPVPGSNFPQYLYEMNYPGNKDASKQEPKSEEEAKPLKLKRDYP*