Scaffold Ga0172362_10039407

Overview

Basic Information

• Taxon OID: 3300013133
• Scaffold ID: Ga0172362_10039407
• Source Dataset Name: Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3761
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province, Lake Kivu
• Coordinates
  • Lat. (^o): -2.05
  • Long. (^o): 29.2062
  • Depth (m): 388

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172362_100394072	F026558	GGA	MNVHELTKKSPIYNAIYEQMLAYQYAYLGGQIFKTYVRKKRPSEDSNLYIDLVNNTVAQPICRYIVDTINDVLFEPGIKRELKFCTPTGAYINPDNTEWAQLLLLDADLQNRSLDGFMEQVGDLTSIYGHCWIFVDMPKEDEGNLGRPYVVAVNPLNVWNWEWEWFGGKPMVKHVKILEAEDKDNYYLKCYHLGTDEYPSYWKNYRVGKNASKNDVEEIGSGTYPAGMAIPGFIAYGRRDPRTMDIGVSDIDSASDAQREHYKLECEAYTSVQFAKTIIRADKGVAIPVHAGAIVRASQGQVETIPVDTGDVDKVTSRQREILEQIEALTGLGGLRNTKNQIASGVAIIEERKTLHRLAKSKARLMEVAEELIFTYAARFMGMRWAGEVHYNTDYEAHDTNYRLALMGQAKAMVQNNPIIDSLITKEIIGMLAPAEKIPQYEQAYIETITDPQVKELMTQDNEQVLSRDLGDQISTPEDFGETEGIYGDDTEYDSAGDYGEGYDDVGIGTPVTYTGQSYYTNQAIATQLQGINTGR*
Ga0172362_100394073	F057213	AGGA	MLENQLDGSVSAPDAEQVTNDAGDGKVNPGAIRKSTTQSILNALGQASGQNFESVEAALAYVARTSSQQRGGNAQPVESEPTDNSRMGRDVGDDSTDLRDQFMKLQRDLAQKDRALRMKELDTDILRNMGDRFDPDLQDYALQKIKSNLQFKRDGSYAIINQKGQERYGMDGNPLSLKGLVEEVAQGNPKLLKQNNLSSGSGLRPGQSQFAGAPPDQIPDYSKDPAAFNAWASKMGLGKRVGLKGAGVTATVSGQSRKIV*
Ga0172362_100394074	F011761	AGGAG	MAYVLGGSNDEADGFTTAIANFALRAMHESTGLVEFTQVVAPNQGNQYLVPNFAPITYQDYNPAGSGSGDGFGSPPLAVEQNPALGQGSITATPAVAATAFDVFYAWTTSFELAATLGAELGESYGEKVDQRVCAAFTSFKATPGNTNYSPTPADGFARPTQLGAMELVQSGYTGGTQTAGFTSNTVLGLVRNVKQNYKTARLPGTPIIVLDSNGDAPNNFSYSVAGQGGSSLNRMLAELTGGAVSQSGGSNLSALGNELLSTGRIESVYGCAVLFTTFLSSA