Scaffold Ga0172372_10036855

Overview

Basic Information

• Taxon OID: 3300013132
• Scaffold ID: Ga0172372_10036855
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 5046
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F003543	Metagenome / Metatranscriptome	480	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y
F006841	Metagenome / Metatranscriptome	363	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172372_100368552	F005054	N/A	MAEVLINSQSPITHNVFWNGDIVEADALPTVKLFDVTNDPSISPAISPTQILDTLSSVADENNPGSYTVYVPYSYTNRNRTLRLKWEYQINGTGVARYDDVFVVTPYIDFNHVAELGFSTDSSDPNYRSYKDLLKAERYARKQIEEFTGQKFYLYDDLQLVYGHGSDTLPLTAKIYSLQKLHANGILLIDNLNQINNWNYPVEISESGYGIKINRADLLDNTVYTANGMVPPSIHDSPGVFQDKVAYKVQGKFGWEKVPDNVELAGIELMKDYFSKDIMWRNKYVKTISTFDWDFEYTGNAYTGTGNAYADSLLADYVLTTKVEII*
Ga0172372_100368553	F001229	N/A	MNLDVYRQSEIQDSDTGAIVREWNYYKTIPCHAKGVISNSATTRSSDKQIFSNKYLNDQVVQVRTAERLTIREKVTNIRDAEGNTIWTEINFPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0172372_100368554	F001900	GGA	MLVQAASGLERMMYANQNGPLKDSTVAQVSAFVYYEAAVISKLTTNDRFKAAFTKIIFDQINIDFGNYIDALARSKPKSLHHVYEWKRTGNKSARLFKLNKISEDGLSFRINYELLPSRSMVPNSTGKRRHVFVNKAAVMEEGRPLTIRPKNTERLVFEIDGETIFMPKGKPVTVRRPGGSAARNQFTLAHSRFFSGRLVNESIKRSGFQKIFNSSMTKALRVPSNIKKVQYSFSPNAIRSQADAALTASFGGAM*
Ga0172372_100368555	F000258	GGAGG	VTANYKLDAMLELRKYLWKELYTRDIFDENEYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWMICCEQILFTIYSTSIADINEIRNYMTDEFRRMDESARDINKWSGLSNKFKFHSVYVADISPTAPSEELQGFFSAEVILEIKYSRITDGQGRFL*
Ga0172372_100368557	F006841	AGGAGG	LATTVYNVEEVQLQNGQTVKLKPLSIKELRKFMIAIKKTADSKTEDDTLNILIDACAIALEKQLPELVANREAFEDAIDVPTMNRILEVCGGIKLDDPNLVAAAVLAGQN*
Ga0172372_100368558	F005479	N/A	MPELINTLQALKKKDYEDKKFFASLKGVDIGEYQDDKKRGSSFEDIELRAAGINAVSNDVVSLQGRFAAQAGFGIGEGLGYTKE*
Ga0172372_100368559	F003543	AGGAG	MADETISTRIVANADFSALIADVHKVTASLSKLQEQLANSNKMMANQIAVMNRSFADTLRSTGQFSTHFVSLQSDVEKFGKNLDGGKLKLNQYFNTFRDHARTSGGLIRDLAKQQVALQNSVLQPLGRNAQGLMQFNVHVPRGLDEIKNKTAIARQELAIMNKVIQ