Scaffold Ga0172372_10002653

Overview

Basic Information

• Taxon OID: 3300013132
• Scaffold ID: Ga0172372_10002653
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 26974
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (39.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021016	Metagenome / Metatranscriptome	221	Y
F036587	Metagenome / Metatranscriptome	169	Y
F091629	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172372_100026533	F021016	N/A	MFWFTKIKIAFLHAAYHRNMKRAEVARKQSDIIKFKKYIYAAEDAWRKLVILTNKIKKNG
Ga0172372_1000265333	F091629	N/A	MSSDLTPEQQEQYNAFLQELTKNIDPTDYMPPSIREVARMDMQTLKSEYDLVQAKESERSSAQRRWITERYEYELAKVEAVAQTENEDDTVK*
Ga0172372_100026534	F036587	N/A	MGRKSAHTGESPKDRSINIMDKFITKNMNREKHQIQKSGRRKDPNIPIHMWPLKDQIEYWESRTDADRFDDAFPVYSFWIAEVQKQSKVHSSFFNDQAIKLKSMLLEMYDTKTMPRDAVLELRKHGVY*