Scaffold Ga0172373_10050012

Overview

Basic Information

• Taxon OID: 3300013131
• Scaffold ID: Ga0172373_10050012
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3618
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F022860	Metagenome / Metatranscriptome	212	Y
F033780	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172373_100500122	F033780	AGGTGG	MVSGCPWSLVAVHWIDAFDSENGWIHTKSYKAKPQHVVSVGWLWADLLEGYLSVTCSYCPDEDPEMDTVGMVTHIPLGMVQKVVMLGNPQF*
Ga0172373_100500128	F003378	GAG	MEIVNKSIAKTLDLGQRLFSLFVATALPAITGGAVIGVSVVKSALIAGFMAVAGVLQKLAAASTDGELTSEEIAEAFKK*
Ga0172373_100500129	F022860	AGGA	MKRFLSYVTENSWTLAGTGLVLITLSGPTLRQALWITGVALVLHSLLTFTQGEDSE*