Scaffold Ga0172373_10049052

Overview

Basic Information

• Taxon OID: 3300013131
• Scaffold ID: Ga0172373_10049052
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3670
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F044450	Metagenome / Metatranscriptome	154	N
F056549	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172373_100490524	F056549	GGGGG	VAEPYVPIAQHTTYNALLVELEVTTDAAETYTDDLESAVDNALADKNTAENLVAEKFNILFLVGC*
Ga0172373_100490526	F024770	AGGAG	MAVSHQRVSVGTTATKLTSDADGRDGQTISIQVPSEGATVYLGGSGVTTTSYGYELLGGTSFAVELQQGEQVFGVVASSTQTVNVFRQGA*
Ga0172373_100490527	F044450	N/A	MKAQILKSMVVEGRKLVAGDIIEVKGWRHAKTLANNRYIKLIEEDVLEEKVAEAPKPKATKKAKEEIVE*