Scaffold Ga0172373_10019071

Overview

Basic Information

• Taxon OID: 3300013131
• Scaffold ID: Ga0172373_10019071
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 7342
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009135	Metagenome / Metatranscriptome	322	Y
F042296	Metagenome / Metatranscriptome	158	Y
F078623	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172373_1001907113	F042296	N/A	MNRFKSIVKWIGIATLLATVAYAATVSEPIKLYVIYTYKFNERVIEKIYIKKENAQKYCDAFKENHNYTFEEITVTE*
Ga0172373_1001907115	F009135	N/A	MNKPKYYLTVNLPPNFDGVDAEMIKKDLLAYILSRNQYGAMYGPKASKKGITIDKVLYRTNED*
Ga0172373_100190715	F078623	N/A	MKDTIIIHNVQDKSSREFVAAYGNRNDVTVLEDDGLHVRLTFPYISAFPTVVIPTPTYQISSSISSSITTISASIEYLRAPEDWNIVQDRIDYWENKVPNWKQTDTRYKQ*