Scaffold Ga0172373_10011019

Overview

Basic Information

• Taxon OID: 3300013131
• Scaffold ID: Ga0172373_10011019
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 10889
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004694	Metagenome / Metatranscriptome	427	Y
F014606	Metagenome	261	Y
F036674	Metagenome	169	Y
F088772	Metagenome	109	N
F100729	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172373_1001101914	F036674	N/A	MAVRDFDPTQLAADQGGILDQAGITFAYLGSTVTGVWSSSRTMFGDFEEQRRDDVRFTVFFTTSQVTGTPAPATTCGRAGVTYFVEQVRFDAEGAGCEMDVIKAI*
Ga0172373_1001101916	F014606	AGGAG	MSTRTNIRNAIATALTTQGVVVTANILKGRNNTLASVSFPSCAVYAVHEDVEVRTLAPANRDQYRVLQVVVEYFTAQTSTTLIDDLFDTGSAAVEAAVLSDVTLGGVCRDLHLTSVDYVIEPDENLRWGTARHNFNCIYLTTD*
Ga0172373_100110192	F004694	N/A	MNTIINVSPVSVWTSSGTKSATQFGVRYVNYQNGPAVADCVLLDAAGAEVSAQLVNATEAQTAAWTDDASFYAVLAQNAGLTPL*
Ga0172373_100110194	F088772	GAG	MSLISFLASAAGGTILGGLTQVLGSAVGELKEWSASKRRIAELAAMKEKQIAIAEVEAFAKAVEGTVNSSYAPPPTAPSWMHGLLAIAAFSTQMVRPLMVAGACAYIWTRPADQLAGLQPEILTVSFACVYFWLGVRHQMSRSK*
Ga0172373_100110197	F100729	N/A	VNWKQLVEAQNRRTYVLPPGWDSRDKIAEQLECSIDNVRVLLGPAIRAKSVEVSVFPVWDEVTKKVVRVTAYRRREGQNVKAGK*