Scaffold Ga0172373_10009685

Overview

Basic Information

• Taxon OID: 3300013131
• Scaffold ID: Ga0172373_10009685
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 11916
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006017	Metagenome / Metatranscriptome	383	N
F011388	Metagenome	291	Y
F026257	Metagenome	198	Y
F027501	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172373_1000968512	F006017	GGA	MKFQVRSQLDHVEKGGILDDCGPSSTAAAVSWASKYTVNPSAGDGIKAKEKATGFVEKEGVSDNGSSLGDLIKTARELGAKARYAKSWDDVVLSAHRGAGLIVWVQQAVDYPPVEISEWHKKWQNYWLKKDKKHIAVGYGHMTAAGWDAVDGWQWACPTRSGKGKEKFGVVVTEEQLKQIAASKKKQTGGAPHKHVVIVEWK*
Ga0172373_1000968513	F027501	AGGAG	MYSDIKAGIRWIIDNTGVDEALIEFGRTFITVSISVALGLGIPLLDITGGDFRTVLSAGLASGLQVLIKFLDPKNSAFGVKEKSPEEKAAADKQFDI*
Ga0172373_1000968518	F011388	AGG	LKPLSNEVAIDLARGRSDIEFFALRWLGIQGNPGQVNWWKACSERDETNFRPKYITTVVSAGNRAGKTLAMAVVCLHHALYKLGIANPNPNDPESAVRWANAPYEWYHVGIQQETAELVFREVEAILGGNHPAQRGRGCPLSKELGKIIDTSKKYRGEYPWIKFHPVVGGASIHFRTTQDRAKALLGKDMNGISFDEAAFEPHLVMIYQEVLNLRRLSTGGPLHFIGTPSEGINDYSELWEKGNPENPARDEKFISFRLSTRDNIGYGLTQENFDDVVRQQAPYLIPQNIDGYFIEARDSFFWSQSILAAYKSLDHETKPERNHRYVQGVDPGISHDATWSITLDITDRRKIRGVRIRKRSGKQSISAVVNMVREGHLLYGQDGAFCTTIVDSTGLGGRLFQQEFSIIRPLRGFDFGGTKAKKVELLNDLKAVIDKGQIEFPIGAAWDELKRQLLIYRLDDKKLEQDAVMALAIAVRHALRNPEKGVENPTFTYFGVSD*
Ga0172373_100096859	F026257	N/A	MTELAPVLTGCHVCRSPLVEAINKKMRDGLPDTKISTWMADAGQYVSRITLGKHRREHLTEPHERLRQQAVTVMKKQSKTIKATGDLAGLVRDYVHSAVEQGLMTPTLAEGLRAQEMIDRRQEKGADREITLQLAGILGGTGAAYQVLEAREIKAVESGE*