Scaffold Ga0172373_10000654

Overview

Basic Information

• Taxon OID: 3300013131
• Scaffold ID: Ga0172373_10000654
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 56817
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (48.39%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001040	Metagenome / Metatranscriptome	795	Y
F006610	Metagenome / Metatranscriptome	369	Y
F013175	Metagenome / Metatranscriptome	273	Y
F017098	Metagenome / Metatranscriptome	242	Y
F040622	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172373_1000065419	F006610	N/A	MKADYRYKVKITDDIADAHDIIRAVGKALTEGKTDKASALDNLARALKKLESAKYYIDRG
Ga0172373_1000065427	F013175	AGAAG	MDSKTLVKALKTAVREVIKEELTEILREGLQSTITEMKQPAKTTNMPSHKNLPPSPKRKTVQFNDNKWANVLNETDALTEDQPLALNSFRDIMNEGMEEIRMTSRDAVNFGAMRQNMKEAIGVAPAAPKVMEDPETGKVFEVPQEVQQAMTRDYSALMKAINNKKGK*
Ga0172373_1000065452	F040622	AGGA	MRTPNLKFILETMMQDQPKPLTREEKQQFVQEIANFSAMGDSVYGKGDLEEIAQRVKNIVERADRIMTESDDWMANVAHKKGNKRMHEDYRDFEQAARDLKEAQDRMALAYENIGQHLNRYFSVG*
Ga0172373_1000065458	F001040	AGGA	MAVERHKYEMFAEIRYAGRLIDVLDRIRAIRMVLMVHIERDLGPDKELIKIKVMTAYPPKQTFFAIRKMCLGKIETLKDMTLLQTTLTKLF*
Ga0172373_100006548	F017098	N/A	MDAKQLNETILNNLTGTDSDMLRWDALQPTDADYMMYSPIPVGYNTTAEQRFLMQNLLVGFAGGSLLDIGCGRCDLYGIARDLAALNNDVVLYSAIDHNPIMTQLGEQKWGLDTVNVGAFETAKLNKHEWVVASGVFTQRRCETEDDDLRKLFDDIDTLYNLSTQVVSFNLMNPINTHHHDGFFYVHPGLVMDMLIERYQFVNVRCNYSRDVYTVLIFKLQ*